Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYETYHSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHNLTNVDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMDFRGEPFEPMPKLMAVSEQVTKLQAVCAVCGSSSSRTQRLINGKPAKIDDPIILVGANESYEPRCRAHHIVAPSDNNKEEL
2J87 Chain:C ((4-175))
-------GHIQLIIGPMFSGKSTELIRRVRRYQIAQYKCVTIKYSND-----------DKNNFEALEATKLCDVL-QSITDFSVIGIDEGQFFPD-IVEFCERMANEGKIVIVAALDGTFQRKPFNNILNLLILSEMVVKLTAVCMKCFKEASFSKRL--GEETEIE----IIGGNDMYQSVCRKCYV-----------
General information:
TITO was launched using:
RESULT:
Template:
2J87.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83330 for 1285 contacts (-64.8/contact) +
2D Compatibility (PS) -17701 + (NN) -9177 + (LL) 2208
1D Compatibility (HY) -16800 + (ID) 3500
Total energy: -128300.0 ( -99.84 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_2J87.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J87-query.scw
PDB file :
Tito_Scwrl_2J87.pdb
: