Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLESKWGLRFIAFLLALFFFLSVNNVFGNIFNTGNLGQKSSKTIQDVPVEILYNTKDLHLTKAPETVNVTISGPQSKIIKIENPEDLRVVIDLSNAKAGKYQEKYQVKGLADDIHYSVKPKLANITLENKVTKKMTVQPDVSQSDIDPLYKITKQEVSPQTVKVTGGEEQLNDIAYLKATFKTNKKINGDTKDVAEVTAFDKKLNKLNVSIQPNEVNLQVKVEPFSKKVKVNVKQKGSLADDKELSSI-----DLEDKEIEIFGSRDDLQNISEVDAEVDLDGISESTEKTVKINLPEHVTKAQ-PSETKAYINVK----- |
4LFU Chain:A ((5-240)) | -DFFSWRRTMLLRFQRM------------------------ETAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYP-------------EAWVSYYQAKNFLA---------------------------------IDPVLNPENFSQGHLMW----NDDLFSEAQPLWEAARAH----GLRRGVTQYLMLPNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSI------SENTVNFHQKNMQKKINAPNKTQVACYAAATGLI |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LFU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 32611 for 1624 contacts (20.1/contact) +
2D Compatibility (PS) -23538 + (NN) -4460 + (LL) 4652
1D Compatibility (HY) -5600 + (ID) 1500
Total energy: 2165.0 ( 1.33 by residue)
QMean score : 0.164
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