Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLDKNQLAKYKQDHLCEYEKIMSNNEKEALEEKVASLDLDFIAKLYNDLYINKKTIDDVSAVSEVKYDIKSQMSDDEIKRLEEQGLQAIKEGQFAVLLMAGGQGTRLGYKGPKGSFEIE---GVSLFELQANQL--------KTLNHQSGHTIQWYIMTSDINHEETLAYFEAHSYFGYDQEAIHFFKQDNIVALSEEG-KLILNQQGRIMETPNGNGGVFKSLDKAGYLEEMSNNGVKYIFLNNIDNVLVKVLDPLFAGFTVEHDYDITSKTIQPK-PGESVGRLV--NVDCKDTVLEYSELDPEVANQ----------FNNANIGIHAFKLGFILNAV------NRELPYHLAIKNLKQLDENFGVIEQPT----LKFELFYFDIFTYG--TSFVTLQVPREEEFSPLKNKEG-KDSVATATEDLRRMGLI |
2YQH Chain:B ((83-436)) | ------------------------------------------------------------------------LSKDILQNWTELGLKAIGNGEVAVLLMA----------APKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNATESFFIENNYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCVDNCLVKVADPIFIGFAIAKKFDLATKVVRKRDANESVGLIVLDQDNQKPCVIEYSEISQELANKKDPQDSSKLFLRAANIVNHYYSVEFLNKMIPKWISSQKYLPFHIAKKKIPSLNLENGEFYKPTEPNGIKLEQFIFDVFPSVELNKFGCLEVDRLDEFSPLKNADGAKNDTPTTCRN------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YQH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -115502 for 2339 contacts (-49.4/contact) +
2D Compatibility (PS) -33910 + (NN) -17987 + (LL) 6428
1D Compatibility (HY) -29200 + (ID) 5900
Total energy: -196071.0 ( -83.83 by residue)
QMean score : 0.467
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