Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKFNVENEHVEVEIEKLYKFSPELVYEAWTKKDLLKQWFMTSARTNKEIEADVKEGGKYRIVDQQRN-GKVNVIEGIYESLVMDEYVKMTIGMPGLS------ETQDVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHVIETSTQQ
2LF2 Chain:A ((8-166))
--DFSVNKENKTITIKREFAAVRAIVWEAFTRAEILDQWWAPKPWKAKTKSMDFKEGGTWLYAMV-GPNGEEHWSICEYAIIKPIERFTGKDGFTDASGKLNTEMPRSNWDMRFIDKGEI-TEVQYHIS-YDDVAQL---------EATIQMGFKEGITMAMENLDELLVSGK--
General information:
TITO was launched using:
RESULT:
Template:
2LF2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17495 for 978 contacts (-17.9/contact) +
2D Compatibility (PS) -16159 + (NN) -373 + (LL) 1236
1D Compatibility (HY) -6000 + (ID) 1250
Total energy: -40041.0 ( -40.94 by residue)
QMean score : 0.292
(partial model without unconserved sides chains):
PDB file :
Tito_2LF2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LF2-query.scw
PDB file :
Tito_Scwrl_2LF2.pdb
: