Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKLENVF--VKKGNKNI--LDGCNFNFEKGKSYALVGESGAGKSTLLNIIAGFEDVSQGSIYIE---------DKLLKKKVDFYRYTLGYLFQNFALLENQTISQNLDLALKFK-KNKKDNMNLKKEVLKKVGLDLDIKRIVS----SLSGGEQQRVALARLILKDPKIILADEPTGSLDTKNGKIVIDLLLKLLDEN-KTMIVVTHDLELAKRFDVIVNISELRS
3TIF Chain:B ((1-210))
MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRD----KIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVAR-------------
General information:
TITO was launched using:
RESULT:
Template:
3TIF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99341 for 1433 contacts (-69.3/contact) +
2D Compatibility (PS) -20788 + (NN) -9115 + (LL) 1608
1D Compatibility (HY) -16000 + (ID) 4000
Total energy: -147636.0 ( -103.03 by residue)
QMean score : 0.593
(partial model without unconserved sides chains):
PDB file :
Tito_3TIF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TIF-query.scw
PDB file :
Tito_Scwrl_3TIF.pdb
: