Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDKGKSVKSTKKSVGMPPKTPKTDNNANSHVDNEFLILQVNDAVFPIGSYTHSFGLE--TYIQQKKVTNKESALEYL---------KANLSSQFLYTEMLSLKLTY-----------------ESTLQQDLKKILGIEEVIMLSTSPMELR----LANQKLGNRFIKTLQAMNEL--------------DMGAFF--------NAYAQTTKDPTHAT---SYGVFAASLNMELKKALRHYLYAQTSNMVINCVKSVPLSQNDGQKILLSLQSPFN------QLIEKTLELDESHLCAASVQNDIKAMQHESLYSRLYMS--- |
| 3VH3 Chain:A ((4-323)) | -MLKIADQSVDLNLKLMKWRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINAALGFDSYLVMRHGNRDEQSSKQLGCYFCHDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQIRGFLHNFSILKLETPAYEHCPACSPKVIEAFTDLGWEFVKKALE-HPLYLEEISGLSVIKQEVER |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VH3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -39091 for 1777 contacts (-22.0/contact) +
2D Compatibility (PS) -26270 + (NN) -3215 + (LL) 128
1D Compatibility (HY) -9600 + (ID) 1850
Total energy: -79898.0 ( -44.96 by residue)
QMean score : 0.262
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