Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFLNGLAGNLLIVVILLC----VVVFFALKAIHIQKEQATNYYRYKDINALEAKNTQNHANYELVNQGSKK
2KVT Chain:A ((1-71))
MPTKPPYPREAYIVTIEKGKPGQTVTWYQLRADHPKPDSLISEHP-TAQEAMDAKKRYEDPDKELEHHHHHH
General information:
TITO was launched using:
RESULT:
Template:
2KVT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15845 for 340 contacts (-46.6/contact) +
2D Compatibility (PS) -7344 + (NN) 724 + (LL) 92
1D Compatibility (HY) 1600 + (ID) 650
Total energy: -21423.0 ( -63.01 by residue)
QMean score : 0.148
(partial model without unconserved sides chains):
PDB file :
Tito_2KVT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KVT-query.scw
PDB file :
Tito_Scwrl_2KVT.pdb
: