Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIKSWTKKWFLILFLMASCFGHLVATTGEKYFKMANQALKRGDYHRAVAFYKRSCNLRMGVGCTSLGSMYEYGDGVDQNISKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKDFPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALSFSKYACSLNY----GISCNFVGYMYKSAKGVEKDLKKALANFKRGCHL-KDGASCVSLGYLYEAGMD--VKQNEEQALNLYKKGCSLKEGSGCHNVAVMYYTGKGAPKDLEKATSYYKKGCALGFSGSCKVLEVIGKESDNLQDDAQNDTQDSVQ |
| 3RJV Chain:A ((4-209)) | ---------------------------------------------EPGSQYQQQAEAGDRRAQYYLADTWVS----SGDYQKAEYWAQKAAAQGDGDALALLAQLKIRN-PQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDRISK------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RJV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -82767 for 1709 contacts (-48.4/contact) +
2D Compatibility (PS) -19507 + (NN) -567 + (LL) 5508
1D Compatibility (HY) 400 + (ID) 1700
Total energy: -98633.0 ( -57.71 by residue)
QMean score : 0.227
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