Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKAIDISHAFE--KPLYNGVNLRIKPKESLAILGVSGSGKSTLLSHLATMLKPDSGTVSLLEHQDIYALNSKKLLELRRLKVGIVFQSHYLFKGFSALENLQVASILAKQEINHSLLEQLGIAHTLK---QGV--------GELSGGQQQRLSIARVLSKKPQIIIADEPTGNLDTTSANQVISMLQNYITENEGALVLATHDEHLAFTCSQVYRLEKESLIKEK
5C78 Chain:B ((349-564))
-LKICNLSFGYEGKKYLFKNLNLNIKKGEKIAFIGESGCGKSTLVDLIIGLLKPKEGQI-LIDKQELNASNAKNY----RQKIGYIPQNIYLFND-SIAKNITFGDAVDEEKLN-KVIKQANLEHFIKNLPQGVQTKVGDGGSNLSGGQKQRIAIARALYLEPEILVLDQATSALDTQSEAKI--MDEIYKISKDKTMIIIAHRLSTITQCDKVYRLEHGKLKEEK
General information:
TITO was launched using:
RESULT:
Template:
5C78.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82449 for 1562 contacts (-52.8/contact) +
2D Compatibility (PS) -21889 + (NN) -5439 + (LL) 1088
1D Compatibility (HY) -16800 + (ID) 3750
Total energy: -129239.0 ( -82.74 by residue)
QMean score : 0.409
(partial model without unconserved sides chains):
PDB file :
Tito_5C78.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5C78-query.scw
PDB file :
Tito_Scwrl_5C78.pdb
: