Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFKDLIEFMVSGPVVVMVLEGKDAVAKNRELMGATDPKLAQKGTIRADFAESIDANAVHGSDSLENAHNEIAFFFAAREF
3VGU Chain:A ((4-137))
--ERTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQLSQEQAEGFYAEHKERPFFGDLVGFMTSGPVVVQVLEGENAIAANRDLMGATNPKEAEAGTIRADYAQSIDANAVHGSDSPESAAREIAYFFAESEI
General information:
TITO was launched using:
RESULT:
Template:
3VGU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62944 for 1028 contacts (-61.2/contact) +
2D Compatibility (PS) -14019 + (NN) -551 + (LL) 272
1D Compatibility (HY) -11600 + (ID) 4500
Total energy: -93342.0 ( -90.80 by residue)
QMean score : 0.614
(partial model without unconserved sides chains):
PDB file :
Tito_3VGU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VGU-query.scw
PDB file :
Tito_Scwrl_3VGU.pdb
: