Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKDYQKLIVYLCDFLEKEVQKKGFKKVVYGLSGGLDSAVV-GVLCQKVFKENAHALLMPSSVSMPESRTDALNLCEKFSIPYTEYSIAP-YDKI-------FGSHFKDASLTRKGNFCARLRMAFLYDYSLKSDSLVIGTSNKSERMLGYGTLFGDLACAINPIGELFKTEVYELAYYLN----------IPKKILNKPPSADLFVGQSDEKDLGYPYSVIDPLLKDIEALFQTKPIHLETLIQLGYAEILVKNIISRIQKNAFKLELPTIAKRFNPE
4F4H Chain:B ((284-542))
----YRALVLGVRDY----IGKNGFPGAIIGLSGGVDSALVLAVAVDALGAERVRAVMMPSRYTAGISTTDAADMARRVGVRYDEIAIAPMFDAFRASLAAEFAGLAEDAT---EENIQARIRGTLLMALSNKFGSIVLTTGNKSEMAVGYCTLYGDMAGGFAVIKDIAKTLVYRLCRYRNAAAEYGQPDIVPERILTR---------------L-PPYDVLDAIMR----MYMEEDRPLAEIVAAGYSEADVKRVTRLIKINEYKRRQAPVGIRVTHR
General information:
TITO was launched using:
RESULT:
Template:
4F4H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -173784 for 1652 contacts (-105.2/contact) +
2D Compatibility (PS) -23766 + (NN) -8463 + (LL) 1492
1D Compatibility (HY) -18400 + (ID) 4050
Total energy: -226971.0 ( -137.39 by residue)
QMean score : 0.434
(partial model without unconserved sides chains):
PDB file :
Tito_4F4H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F4H-query.scw
PDB file :
Tito_Scwrl_4F4H.pdb
: