Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIVVTITSGKGGVGKSTTTANLAIGLAESGKKVVAVDFDIGLRNLDMILGLENRIVYDVVDVMEKNCNLSQALITDKKTKNLSFLAASQSKDKNILDKEKVAILINALR--ADFDYILIDSPAGIESGFEHAILHADMALVVVTPEVSSLRDSDRVIGIIDAKSNRAKSGEEVHKHLIINRLKPELVANGEMISIEEVLKILCLPLIGIIPEDHHIISATNKGEPVIRTD-CESAKAYQRITRRILGEEVEYVEFKAKRGFFSALKGIFS
4V03 Chain:B ((2-244))
-AEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDAD---RNLDMILGLENRIVYDILDVLEGRVPYEKALVKDKRGLSLWLLPA-------VIDIEKWNKTVEEIKNSGNYDYILVDSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKR-------NYKVIVNRIKWEMVKRGAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIVLDEKFPASQAIIDTARRLMGESIPLK-----------------
General information:
TITO was launched using:
RESULT:
Template:
4V03.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -175692 for 1993 contacts (-88.2/contact) +
2D Compatibility (PS) -24750 + (NN) -5259 + (LL) 2132
1D Compatibility (HY) -26800 + (ID) 5700
Total energy: -236069.0 ( -118.45 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_4V03.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4V03-query.scw
PDB file :
Tito_Scwrl_4V03.pdb
: