Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKELRQKRPLVHNITNYVVAQFVANGLLALGVSPLMSDAIAEMPDLAKISDALAINIGTLNERTILCAKEAIKRYKALNKPIVLDPVGCSASALRYDTSLELLESKGISTLRGNAAELGSLVGISCESKGLDSKHSATPIEIVKRAAQKYSVIAVMTGKTDYVSDGKKVLSITGGSEYLAAITGAGCLHAAACASFLSLKKDPLDSMVQLCAFYKQAAFSAQKKALENNGSNGSFLFYFLDALSLPIELENSLIKEEL
1EKQ Chain:A ((9-262))
CLTAVRRHSPLVHSITNNVVTNFTANGLLALGASPVMAYAKEEVADMAKIAGALVLNIGTLSKESVEAMIIAGKSANEHGVPVILDPVGAGATPFRTESARDIIREVRLAAIRGNAAEIAHTVG-------------GDIIRLAQQAAQKLNTVIAITGEVDVIADTSHVYTLHNGHKLLTKVTGAG-LLTSVVGAFCAVEENPLFAAIAAISSYGVAAQLAAQQ--TADKGPGSFQIELLNKLSTVTEQDVQEWATIE
General information:
TITO was launched using:
RESULT:
Template:
1EKQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -149943 for 2159 contacts (-69.5/contact) +
2D Compatibility (PS) -25885 + (NN) -11349 + (LL) 728
1D Compatibility (HY) -13600 + (ID) 4250
Total energy: -204299.0 ( -94.63 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_1EKQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EKQ-query.scw
PDB file :
Tito_Scwrl_1EKQ.pdb
: