Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKTFLIALALTASLIGAENTKWDYKNKENGPHRWDKLHKDFEVCKSGKSQSPINIEHYYHTQDKADLQFKYAASKPKAVFFTHHTLKASFEPTNHINYRGHDYVLDNVHFHAPMEFLINNKTRPLSAHFVHKDAKGRLLVLAIGFEEGKENPNLDPILEGIQKKQNLKEVALDAFLPKSINYYHFNGSLTAPPCTEGVAWFVIEEPLEVSAKQLAEIKKRMKNSPNQRPVQPDYNTVIIKSSAETR
4YHA Chain:C ((8-234))
--------------------TKWDYKNKENGPHRWDKLHKDFEVCKSGKSQSPINIEHYYHTQDKADLQFKYAASKPKAVFFTHHTLKASFEPTNHINYRGHDYVLDNVHFHAPMEFLINNKTRPLSAHFVHKDAKGRLLVLAIGFEEGKENPNLDPILEGIQKKQNFKEVALDAFLPKSINYYHFNGSLTAPPCTEGVAWFVIEEPLEVSAKQLAEIKKRMKNSPNQRPVQPDYNTVIIKSSAETR
General information:
TITO was launched using:
RESULT:
Template:
4YHA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94608 for 1823 contacts (-51.9/contact) +
2D Compatibility (PS) -24326 + (NN) -10726 + (LL) 2084
1D Compatibility (HY) -27600 + (ID) 11300
Total energy: -166476.0 ( -91.32 by residue)
QMean score : 0.462
(partial model without unconserved sides chains):
PDB file :
Tito_4YHA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YHA-query.scw
PDB file :
Tito_Scwrl_4YHA.pdb
: