Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDTPNKDDSIIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVEDNWVEDNPNDGSKIAVLVVIYDHHQRELNQRMIDIQHASGTHVLCTTHIHMDEHNCLETIILQGNSLEIQRLQLEIGGLRGVKFAKLTKASSFEYNE
2CA9 Chain:B ((9-147))
--------SIIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVEDNWAEDNPNDESKIAVLVVIYDHHQRELNQRMIDIQHASGTHVLCTTHIHMDEHNCLETIILQGNSFEIQRLQLEIGGLRGVKFAKLTKASSFEYN-
General information:
TITO was launched using:
RESULT:
Template:
2CA9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42615 for 893 contacts (-47.7/contact) +
2D Compatibility (PS) -15686 + (NN) -8291 + (LL) -20
1D Compatibility (HY) -19600 + (ID) 6750
Total energy: -92962.0 ( -104.10 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_2CA9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CA9-query.scw
PDB file :
Tito_Scwrl_2CA9.pdb
: