Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGSNGIKHVRVDERLIHGQVATMWTNTIKATRIMIVDDAVVKNEMEKVALKTAV-PAGVKLSILTVKGAANNINNDKYAGQQVFLIVKSPHALRGLVDAGVELPQINVGNMSTKAGSRQIKKSVSVTDENLEDFDYLAQKGIKITAQMVPSEDAVEFANLLKK
3EYE Chain:A ((5-157))
----NILLTRIDNRLVHGQVGVTWTSTIGANLLVVVDDVVANDDIQQKLMGITAETYGFGIRFFTIEKTINVIGKAA-PHQKIFLICRTPQTVRKLVEGGIDLKDVNVGNMHFSEGKKQISSKVYVDDQDLTDLRFIKQRGVNVFIQDVPGDQKEQIP-----
General information:
TITO was launched using:
RESULT:
Template:
3EYE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119590 for 1204 contacts (-99.3/contact) +
2D Compatibility (PS) -16331 + (NN) -4290 + (LL) 420
1D Compatibility (HY) -14800 + (ID) 2500
Total energy: -157091.0 ( -130.47 by residue)
QMean score : 0.626
(partial model without unconserved sides chains):
PDB file :
Tito_3EYE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EYE-query.scw
PDB file :
Tito_Scwrl_3EYE.pdb
: