Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILKEVCIENTTNLVNVIEAGANRVELCDNLAEGGTSVS----YGVAKHVVKICHEQNVSVMAMVRPRKGNFVYTKEEISVMIDDILMYKKIAVDGVVFGCITDSGLLDKPAINELLKAAA--G--LEVTFHMAFDELVETEKLSAIDWLVEQGVTRIL------THGGDGAKLPEETFVQWRKYIDYAA---GRIIILPGGGIKSHNLEWIIKETGAAEIHGTDLFGER
1TQJ Chain:A ((22-203))
------------EIKAVDEAGADWIHVDV--MDGRFVPNITIGPLIVDAIRPLTK-KTLDVHLMIV-EP-------------EKYVEDFAKAGADIISVHVEHNAS----PHLHRTLCQIRELGKKAGAVLNPST-------PLDFLEYVL-PVCDLILIMSVNP----QS--FIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLE-AGANAIVAGSA----
General information:
TITO was launched using:
RESULT:
Template:
1TQJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124009 for 1185 contacts (-104.6/contact) +
2D Compatibility (PS) -17011 + (NN) -5640 + (LL) 3788
1D Compatibility (HY) -4400 + (ID) 1300
Total energy: -148572.0 ( -125.38 by residue)
QMean score : 0.426
(partial model without unconserved sides chains):
PDB file :
Tito_1TQJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TQJ-query.scw
PDB file :
Tito_Scwrl_1TQJ.pdb
: