Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVEGLLGFLGAALGIGFSLMVLVIPDISQALEEESFFFYMLTIGSLVL---SGVGLAGSFIVSHKPRLGGAMMVA----------------------AAIGCTMSISIMFLLPIVLLAVGG-LIALINYEEAASVEE----
1SLU Chain:A ((10-142))
-----IAPYPQAEKGMKRQVIQL------TPQEDESTLKVELLIGQTLEVDCNLHRLGGKLENKTLEGWGYDYYVFDKVSSPVSTMMHCPDKEKKFVTAYLGDAGMLRYNSKLPIVVYTPDNVDVKYRVWKAEEKIDNAVVR
General information:
TITO was launched using:
RESULT:
Template:
1SLU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112201 for 589 contacts (-190.5/contact) +
2D Compatibility (PS) -10639 + (NN) 2079 + (LL) 752
1D Compatibility (HY) -2800 + (ID) 950
Total energy: -123759.0 ( -210.12 by residue)
QMean score : 0.017
(partial model without unconserved sides chains):
PDB file :
Tito_1SLU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SLU-query.scw
PDB file :
Tito_Scwrl_1SLU.pdb
: