Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKEVNYREDDWREAKSALAPFAAANWVGGLFNNLEKVSKNMEEAEEDVQELDSDHAISFQHTNYRGKYSAIEDDLMVLYKFSCHAGEKMETLVDQPFYEKLDAFVDGMQDLSISTYSTTNRIGAKSKQTYTTTSGGSQVIESIKEGATIEDLMNGDNFYANQMQLQYRDWQRANPDQDVSKKDFQMGMLHSRAFEYKSIKDEQQEKEFWVNIVATVVIVGVSIFCPPAGLALAVGYGSLEAGSAISGKDWVSGRELSTEERALRGGLALLDIVPGVKALSTGAKAASAGSKLVRVGDNVLAGSKNVGKGTIDNGIQAGKQAMDLRLANAKKVSEAVQKKLTKDLDDIGTMAKTIQNKTKETFTLPPREQLAFARGGSIPEQSATGAAAIAAKKKLKDIMQNMDNLNVKGGGKDDIIEQNKSLKFTSLEESEKWGIDGFSVWRNSLSSREIQAIRDYTDIWHYGNMNGYLRGSVEKLAPDNAERIKNLSSALEKAELPDNIILYRGTSSEILDNFLDL-------K--NLN-------YQNLVGKTIEEKGFMSTTTISNQ-TFS-GNVTMKINAPKGSKGAYLAHFSETPEEAEVLFNIGQKMLIKEVTE--L-----NGKIEIIVDLL |
2J3X Chain:A ((216-423)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SQELDFYN-KGSEAWGAENYGDYISKLSHEQLGALEGYLH-SDYKAINSYLRNNRVPNNDELNKKIELISSALSVKPIPQTLIAYRRVDGIPFDLPSDFSFDKKENGEIIADKQKLNEFIDKWTGKEIENLSFSSTSLKSTPSSFSKRRFIFRLRLSEGAIGAFIYGFSGFQDEQEILLNKNSTFKIFRITPITSIINRVTKMTQVVIDA- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2J3X.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -55723 for 1322 contacts (-42.2/contact) +
2D Compatibility (PS) -19064 + (NN) 1596 + (LL) 26700
1D Compatibility (HY) -9600 + (ID) 2400
Total energy: -58491.0 ( -44.24 by residue)
QMean score : 0.380
|
|
|