Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MKKLKQLTN-----------QLFTSTIFLVTMLFIIPPTFAIADGSKVSFY---EYIYGAPLRWLTVISTTEKKGAFLEMFFSENEGINIQWLNLIINFLLVFLVITIIFSLAKKFYNKKNA
2JTD Chain:A ((1-122))
EEEMKRLLALSQEHKFPTVPTKSELAVEILEKGQVRFWMQAE-KLSSNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEG--TYTFQIQDGKATGHSTLVLIGDVYKKLQKEAEF
General information:
TITO was launched using:
RESULT:
Template:
2JTD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54280 for 663 contacts (-81.9/contact) +
2D Compatibility (PS) -11091 + (NN) 964 + (LL) 256
1D Compatibility (HY) -1200 + (ID) 1000
Total energy: -66351.0 ( -100.08 by residue)
QMean score : 0.143
(partial model without unconserved sides chains):
PDB file :
Tito_2JTD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JTD-query.scw
PDB file :
Tito_Scwrl_2JTD.pdb
: