Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQVLVLPENKDINYIKTVQEVKRFFADFERFRMITGLSKKPHLLRNGFLEEPQFEPVAFSARHNKEVILEARWLVEKYTEMLNQMDDLYRTILMECYVERKQDVAVMMDLPYEIAQFKRIKKRAVLELATLMGILVRK
2RNJ Chain:A ((143-192))
-------------------------------------------------------------------------------ELYEMLTEREMEILLL-IAKGYSNQEIASASHITIKTVKTHVSNILSKLEV--------
General information:
TITO was launched using:
RESULT:
Template:
2RNJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28091 for 315 contacts (-89.2/contact) +
2D Compatibility (PS) -5401 + (NN) -3472 + (LL) 7984
1D Compatibility (HY) -1600 + (ID) 300
Total energy: -30880.0 ( -98.03 by residue)
QMean score : 0.389
(partial model without unconserved sides chains):
PDB file :
Tito_2RNJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RNJ-query.scw
PDB file :
Tito_Scwrl_2RNJ.pdb
: