Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------MSEIKVKEATLAKYATKLESKG--KSTEYLPMKGGNMSYSQANSINHFRTALFDLVDAVDNFQGVVGTDAKRLKELGASF-TRKDQELERSMGLGGK-
4IP8 Chain:A ((1-105))
MRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNYDAAKRGPGGVWAAEAISDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNHFRPAGLPEKY
General information:
TITO was launched using:
RESULT:
Template:
4IP8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 20255 for 669 contacts (30.3/contact) +
2D Compatibility (PS) -9786 + (NN) -2777 + (LL) 0
1D Compatibility (HY) 3600 + (ID) 750
Total energy: 10542.0 ( 15.76 by residue)
QMean score : 0.277
(partial model without unconserved sides chains):
PDB file :
Tito_4IP8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IP8-query.scw
PDB file :
Tito_Scwrl_4IP8.pdb
: