Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------------------------------------------------------------MNIVIALIPAVMWGIMPLVVSKIGGKPR-QQIIGTTF----GALAFAIGVFIFTNPEYTATI--IIASFVSGAFWSLGQMNQFRAFTQVGVSKTMPLSTGMQLVGTS------LFGVFAFHEWGTTSKLV-LGFSALALI--IIGIFLTSYQQHKDENSGQNMKKGIITLLI--SSVGYVGYVVI---------TRWFDISGWDA--------------ILPQAIGMVVA--GLLFSIKSEEKRFT----------KQTWLNMIP-----------G-VMWATGNLALLFSNK----------LVGIATGFSLSQMGVVISTI-------GGILFLGEKKTKKELILVII---GVVLVIIGGTMIGIAKS---- |
| 4R5O Chain:A ((2-427)) | DDCEDLHLGNLAHYPNVLKGTFPTESQVLELGETLEITPELLNPEGATYSWLVNGKEYSTEPTFSYKIDNPCRADLSCIIKNKYGKVEMSTSFSSNHNFSKGFFYVADGTFNFYDTEKKTAYQDCYASLNAGKTLGIGNYDSANIIHSNG--------KFYLLVGTSTSNRDHFYIVDAKTLYYENSAVVGANLSGLTILNEQYGLVTGDGIRRIDLKSLNNVRIKNERLLCFYNSIIYNGKVLSNDTYKDESKVKYYDVNELIAAKEGEAPAVTELDIIQKQKINFVLAKDGNVYTLESADNGCNIVKIKNDFTLEKVFANFQPAKGPYHSSPTIGMVASETENIIYLVSTDGAIYKYILGDSDSLKAPFIAAESGVSITAPLQLNQQSGELYVTYTEERKDESKIVVYSKDGKVLHTVDCGESVPSQILFNN |
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General information:
TITO was launched using:
| RESULT:
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Template: 4R5O.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -195400 for 1829 contacts (-106.8/contact) +
2D Compatibility (PS) -29725 + (NN) 4586 + (LL) 496
1D Compatibility (HY) -11200 + (ID) 3150
Total energy: -234393.0 ( -128.15 by residue)
QMean score : 0.043
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