Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDILRKGNKDLIKDINRYTVLNLIREKGEITRTEIAKKCDFGMSTLTYILDDLQQEGIILEGAETSSTGGRRAKLVRFNKDYGFVVSVKVEEEQLLFALTDLNAEIIENTSIPFSSEKKPEEAIELIAKNVKKMCGNRDMNHLLGVGIAISGLVNRKKGTVIRSTML-GWENVALEAMLHAHFPDIPVYVDKNINCYTLAELWLGEGKQSNNFATVSVGAGLGLSVVINRQIYYGAQGGAGEFGHTTIQPG----------GYKCHCGQKGCLEMYASEFYFRNRGEELKEAYPTSELNDFHFDKVAKSARAGDEMATELMGKMGEYLGYGIRNIINTFNPEKVIIVGEGLHHRDLFLTKIDEIASQNFFSGAGFETEITTTSLEDPAWLQGAALLVIHQLFQVPIYEEEQTLLR |
2AP1 Chain:A ((23-326)) | --------------------------------------------------------------------------------NA-MYYGFDIGGTKIALGVFDSTRRLQWEKRVPTPHT-SYSAFLDAVCELVEEADQ--RFGVKGSVGIGIPGMPETEDGTLY-AANVPAASGKPLRADLSARL-DRDVRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLVLNGKPITGQSYITGEFGHMRLPVDALTLMGFDFPLRRCGCGQMGCIENYLSGRGFAWLYQHYYDQ-------SLQAPEIIALWEQGDEQAHAHVERYLDLLAVCLGNILTIVDPDLLVIGGGLSNF-TAITTQLAERLPRHLLP-VARAPRIERARHGDAGGMRGAAFLHLT---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2AP1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -214095 for 2527 contacts (-84.7/contact) +
2D Compatibility (PS) -31400 + (NN) -11117 + (LL) 7340
1D Compatibility (HY) -12400 + (ID) 3150
Total energy: -264822.0 ( -104.80 by residue)
QMean score : 0.498
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