Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTMENSSNVAQSSKWKLPIMIAGFVIVVALVFYFVFEGTKNDITIVNAGEKIESRTHAKTVSEALDEAGIKVSERDEIAPGKNAEIKDGMEIKYLPARQITINDNGTKKDVWSTKANVADLLKDENITTRPQDVLNVALDTKLKNGLEVNINRAIQLSLQNGAKKDTVWTTKTKVSDLLAEKNIKLDQDDRVSPAKDSNLKEKMTVEVTYVNSKAEKKNEQVKFETVYKEDDSLNKGVEKVVQEGKNGKKVVEYKVTFENGKEKKRDVIKENVTSNKTDKVVVRGTKEKVVATPVSNVSTSSATSSSSSSASSTPSGGKTYKMESTAYSGGGTTAYGINLSANPGLKVIAVDPRIIPLGSKVWVEGY---------GEAIAGDTGGAIKG-NIVDVYFPNESQCYSW-GR--RMVTVKVLN |
| 2G5D Chain:A ((345-430)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PVGALGTPLMG---EYAGAIDRHYITLGAPLFVATAHPVTRKALNRLIMAQDTGSAIKGAVRVDYFWGYGDEAGELAGKQKTTGYVWQL- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2G5D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -40762 for 460 contacts (-88.6/contact) +
2D Compatibility (PS) -7712 + (NN) -1211 + (LL) 20004
1D Compatibility (HY) -2800 + (ID) 1100
Total energy: -33581.0 ( -73.00 by residue)
QMean score : 0.262
|
|
|