Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKAFLSIGTNIGERLENLNDALRGLAASNQINITNVSSVYETDAVGYEDQAAFLNIAVEIETDFPPIDLLDFCLALELELGRVRLF-KWGPRLIDIDVLLYDDVKTDTEKLKIPHPYMKERAFVMIPLIEISPEKSNLVENPALLEEQGVRKIKNQVNW
4M5N Chain:B ((4-138))
MTVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPE-------------------------
General information:
TITO was launched using:
RESULT:
Template:
4M5N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95446 for 1031 contacts (-92.6/contact) +
2D Compatibility (PS) -14348 + (NN) -5583 + (LL) 1792
1D Compatibility (HY) -11200 + (ID) 2850
Total energy: -127635.0 ( -123.80 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_4M5N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M5N-query.scw
PDB file :
Tito_Scwrl_4M5N.pdb
: