Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKNWYVV------HTYSGYENKVKANLEKRVES-MGMSDKIFRVIVPEEEETEVKNGKTKTIKRKVFPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPEEADRILKSMGMV-EKRAEADFEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKL
2XHC Chain:A ((170-352))
-DVYYIPLDVFDRDRIKKGKEVKQGEMLAEARKFFAKV-SGRVEVVDYSTRK---EIRIYKTKRRKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGG---QPVPVKDREMRPILRLAGLEEY---ELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVLHVSEVEKI
General information:
TITO was launched using:
RESULT:
Template:
2XHC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19924 for 882 contacts (-22.6/contact) +
2D Compatibility (PS) -17658 + (NN) -1739 + (LL) 608
1D Compatibility (HY) -11600 + (ID) 2850
Total energy: -53163.0 ( -60.28 by residue)
QMean score : 0.376
(partial model without unconserved sides chains):
PDB file :
Tito_2XHC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XHC-query.scw
PDB file :
Tito_Scwrl_2XHC.pdb
: