Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VAKKVIKEVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTADQAGLIIPVVITVFEDRSFTFITKTPPAAVLLKKAAKVEKGSGEPNKTKVASVTRAQVQEIAETKMPDLNAANVESAMLMVEGTARSMGITIQD
3CJT Chain:B ((2-138))
--KKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYADRSFTFVTKTPPASYLIRKAAGLEKGAHKPGREKVGR-------EIAKQKMP------LEAAARMIAGSARSMGVEV--
General information:
TITO was launched using:
RESULT:
Template:
3CJT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68843 for 805 contacts (-85.5/contact) +
2D Compatibility (PS) -13751 + (NN) -8824 + (LL) 1528
1D Compatibility (HY) -11600 + (ID) 3800
Total energy: -105290.0 ( -130.80 by residue)
QMean score : 0.475
(partial model without unconserved sides chains):
PDB file :
Tito_3CJT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CJT-query.scw
PDB file :
Tito_Scwrl_3CJT.pdb
: