Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTTIQQLVKHVSVREFKNERLSDETKQHLLTAARSASSSHFVQSFSILEITDEKLRKELAEITNSASYVNQTGTFYVFVGDLYRQSKLLLE---NNRT----------L-DGL---RNMESLLVSVIDATIAAQNMVIAAESLDLGICYIGGIRNDIGKVAELLNLPPFTIPVFGLTVGVPEYKNQVKPRLLLENQVGENQYPHEQFTDLKAYEELTKDYYALREKNQHQTSWGDKNVEFFEEIRRPEIASFLKKQGFTLD
1NOX Chain:A ((8-204))
-LDAKTAALKRRSIRRYRKDPVPEGLLREILEAALRAPSAWNLQPWRIVVVRDPATKRALREAAFGQAHVEEAPVVLVLYADLEDALAHLDEVIHPGVQGERREAQKQAIQRAFAAMGQEARKAWASGQSYILLGYLLLLLEAYGLGSVPMLGF--DPERVRAILGLPSRAAIPALVALGYPAEEGYPSHRLPLERVVLW--------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1NOX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99975 for 1288 contacts (-77.6/contact) +
2D Compatibility (PS) -19854 + (NN) -11330 + (LL) 4512
1D Compatibility (HY) -6800 + (ID) 1800
Total energy: -135247.0 ( -105.01 by residue)
QMean score : 0.657
(partial model without unconserved sides chains):
PDB file :
Tito_1NOX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NOX-query.scw
PDB file :
Tito_Scwrl_1NOX.pdb
: