Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDYVITTELPSAEEFVQLRVDAGLSFRAIEASRKALLKSVYFVGLRSKENGKLIGMGRLVGDGIMFIVSD------IAVFPSFQGKGFGKVIMTHIKDYIEANLDKTACVTLLADVPAH-----GLYKQFGFRESAPASIGMIYQVGN
2CNM Chain:C ((42-123))
-------------------------------------------------NLKLTADDRMAAFAITQVVLDEATLFNIAVDPDFQRRGLGRMLLEHLIDELETR----GVVTLWLEVRASNAAAIALYESLGFNEA-------------
General information:
TITO was launched using:
RESULT:
Template:
2CNM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39034 for 381 contacts (-102.5/contact) +
2D Compatibility (PS) -7607 + (NN) -968 + (LL) 5424
1D Compatibility (HY) -6400 + (ID) 1400
Total energy: -49985.0 ( -131.19 by residue)
QMean score : 0.395
(partial model without unconserved sides chains):
PDB file :
Tito_2CNM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CNM-query.scw
PDB file :
Tito_Scwrl_2CNM.pdb
: