Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTELEKMIAGEMYDPSDRELAHGRNRARKFCREINDAMDSE--SRASVLKRLFGGTKENVYVEPDFRVDYGSNIYVGENFYANFDCVILDVCEVHIGDNCMMAPGVHIYTATHPLDPVERNSGLELGKPVEIGDNVWIGGRAIINPGVKLGNNVVVASGAVVTKSFPDNVVVAGNPARVIKTIEVEEK
1KRU Chain:B ((7-190))
-----ERIRAGKLFTDMCEGLPEKRLRGKTLMYEFNHSHPSEVEKRESLIKEMFATVGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKDIPPNVVAAGVPCRVIREINDRDK
General information:
TITO was launched using:
RESULT:
Template:
1KRU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147401 for 1388 contacts (-106.2/contact) +
2D Compatibility (PS) -19812 + (NN) -7639 + (LL) 604
1D Compatibility (HY) -16400 + (ID) 3850
Total energy: -194498.0 ( -140.13 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_1KRU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KRU-query.scw
PDB file :
Tito_Scwrl_1KRU.pdb
: