Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIAIGNDHVGIELKPVIVAYLQDLGHEVDDFGAFSNERTDYPEYGKKVAESVAAGKSDLGILICGSGVGISIAANKVNGIRAVVCSEPYSAKLSREHNNTNILAFGSRVVGAELAKMIVQNWLDAEF-EGGRHAKRVEMIARIEDEND
4LFN Chain:D ((1-148))
MIIAIGNDHIVTMQKIEISNMLKDMGYTVIDEGTYDTHRTHYPIYGKKVAEDVADGRADLGIVMCGTGIGISTAADKNEGIRAAMCDDVTSAVYAREQLNANVLGIGGAVVGVHLIQDIVKAYLDATYKETPENKKLIDKIDNIAKPN-
General information:
TITO was launched using:
RESULT:
Template:
4LFN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90033 for 1242 contacts (-72.5/contact) +
2D Compatibility (PS) -15918 + (NN) -5874 + (LL) -76
1D Compatibility (HY) -11200 + (ID) 3500
Total energy: -126601.0 ( -101.93 by residue)
QMean score : 0.556
(partial model without unconserved sides chains):
PDB file :
Tito_4LFN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LFN-query.scw
PDB file :
Tito_Scwrl_4LFN.pdb
: