Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VNPAYFVLLVEELKTKYLVKDICQILQVPLSTYYRWKKKDFSQSSLEKKIGQLCKAYQFTYGYRKIAALMKQEEQVGINKVQRIMQKYQWQCQVKVKKKNRPGSAYYQTENHLNRNFQASQPLEKLTTDITYLYFGDCRLYLSSIMDLYNGEIVAYSIGEKQDTELVLDTLNQLS--LPEGSLLHSDQGSVYTSYEYYQCCKKKNVIRSMSRKGTPADNAPIECFHSSLKCETFYHKTAYKYAKSIVIQIVKDYIKYYNEKRIQQKLGYQSPINFRKQAA |
1K6Y Chain:A ((56-202)) | ------------------------------------------------------------------------------------------------------------------------CSPGIWQLDCTHL----EGKVILVAVHVASGYIEAEVIPA-ETGQETAYFLLKLAGRWP-VKTVHTDNGSNFTSTTVKAACDWAGIKQED---------GVIESMNKELKKIIGQVRD----QAEHLKTAVQMAVFIHNK-KRKGGIGGYSAGERIVD-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1K6Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -49137 for 1032 contacts (-47.6/contact) +
2D Compatibility (PS) -14190 + (NN) -4222 + (LL) 10908
1D Compatibility (HY) 2400 + (ID) 1250
Total energy: -55491.0 ( -53.77 by residue)
QMean score : 0.357
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