Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRAILIGVLII----LLIAMIL-----IVLLPAILAMVGAVLGFWSLKKLLEARSVGEKVIYGV----LIGVGALIILANLKGILVVVII-------GAIIYFLTRNKNKPRKNDDVFDYPYNK
1ZPS Chain:A ((8-131))
VNILLNFRHNINGEDLIIAVAQDHETGEVLMVAYMNREALRRTLETGTAHYWSTSRGKLWLKGESSGHVQRVKDVLVDCDGDAVVLKVEQEGGACHTGYRSCFYRSIDGDELKVREDAVKVFDP
General information:
TITO was launched using:
RESULT:
Template:
1ZPS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111761 for 665 contacts (-168.1/contact) +
2D Compatibility (PS) -10239 + (NN) 7593 + (LL) 0
1D Compatibility (HY) -800 + (ID) 800
Total energy: -116007.0 ( -174.45 by residue)
QMean score : 0.204
(partial model without unconserved sides chains):
PDB file :
Tito_1ZPS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZPS-query.scw
PDB file :
Tito_Scwrl_1ZPS.pdb
: