Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVITYGTFDLLHWGHIHLLKRAKAL--GDYLIVAISSDE-------FNRIKHKEAYHSYEHRKLIIEAIRYVDEVIPENNWEQKRDDIEKYGIDVFVMGDD----WEGEFDFLKDVCEV-VYLP--RTEGISTSQIKDELK
4MVC Chain:B ((98-245))
--RVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQH-------CRYVDEVVRNAPWTLTPEFLAEHRID-FVAHDDIPYSSAGSDDVYKHIKEAGMFAPTQRTEGISTSDI-----
General information:
TITO was launched using:
RESULT:
Template:
4MVC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76596 for 797 contacts (-96.1/contact) +
2D Compatibility (PS) -11874 + (NN) -644 + (LL) 1792
1D Compatibility (HY) -8800 + (ID) 2500
Total energy: -98622.0 ( -123.74 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_4MVC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MVC-query.scw
PDB file :
Tito_Scwrl_4MVC.pdb
: