Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEL-KHVIPNMEKTFGQLEFAGEGKVEQRRIN-GK--PTILSRSYNLYSNIQRADDIVVILPAEAGEKHFEIEQKVKLVNPRITAEGYKIGTRGFTNYVMYADDIVKV
2K5D Chain:A ((2-107))
MRLANGIVLDKDTTFGELKFSALRREVRIQNEDGSVSDEIKERTYDLKSKGQGR-MIQVSIPASVPLKEFDYNARVELINPIADTVATATYQGADVDWYIKADDIVL-
General information:
TITO was launched using:
RESULT:
Template:
2K5D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25702 for 594 contacts (-43.3/contact) +
2D Compatibility (PS) -10286 + (NN) 2278 + (LL) 116
1D Compatibility (HY) -4000 + (ID) 1450
Total energy: -39044.0 ( -65.73 by residue)
QMean score : 0.332
(partial model without unconserved sides chains):
PDB file :
Tito_2K5D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K5D-query.scw
PDB file :
Tito_Scwrl_2K5D.pdb
: