Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LEKEKVVNIQPLMDSQVESQFTQQIQEDFNKKNPDHSALLHSLETVEVLDVLSDYYTAHEKQKQPPKETTSPSKSNGEHKEIKQAIRYIKKNI-HRSITLEEVANHVYLSPFYLSKLFKNELNINFINYVNEQKMLYAKEQLEKSDWAVHTIAKNLGFSRASYFCKVFKKEFKMTPKEYRDSLK
3LSG Chain:A ((2-103))
-------------------------------------------------------------------------------NAKELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNFGIPFQDYLLQKRMEKAKLLLLTTELKNYEIAEQVGFEDVNYFITKFKKYYQITPKQYRE---
General information:
TITO was launched using:
RESULT:
Template:
3LSG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46365 for 674 contacts (-68.8/contact) +
2D Compatibility (PS) -10621 + (NN) -5121 + (LL) 4996
1D Compatibility (HY) -8400 + (ID) 1550
Total energy: -67061.0 ( -99.50 by residue)
QMean score : 0.690
(partial model without unconserved sides chains):
PDB file :
Tito_3LSG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LSG-query.scw
PDB file :
Tito_Scwrl_3LSG.pdb
: