Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKIIIATANKGKAKEFEKIFAKFNIEVATLA-DFPEIGEIEETGTTFAENAALKAETVASVLNQTVIADDSGLIVDALDGAPGVYSA---RYAGVAHDDAKNNEKLLKNLEGVEPDKRTARFHCTLAVATPSEKTSFYTGEVEGVIAEQLCGTNGFGYDPLFFLPEFG-LTMAEIPAEKKNEISHRANAIKQLEKDLVEVVEKVTKK
2DVN Chain:B ((2-174))
--KIFFITSNPGKVREVANFLGTFGIEIVQLKHEYPEI-----QAEKLEDVVDFGISWLKGKVPEPFMIEDSGLFIESLKGFPGVYSSYVYRTIGL--------EGILKLMEGAE--DRRAYFKSVIGFYIDGKAYKF-SGVTWGRISNEKRGTHGFGYDPI-FIPEGSEKTFAEMTIEEKNALSHRGKALK----------------
General information:
TITO was launched using:
RESULT:
Template:
2DVN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63816 for 1280 contacts (-49.9/contact) +
2D Compatibility (PS) -18037 + (NN) -6826 + (LL) 2400
1D Compatibility (HY) -12800 + (ID) 3100
Total energy: -102179.0 ( -79.83 by residue)
QMean score : 0.572
(partial model without unconserved sides chains):
PDB file :
Tito_2DVN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DVN-query.scw
PDB file :
Tito_Scwrl_2DVN.pdb
: