Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKKKIDWRDERGFTLVEMLIVLLVVSVLLLLTIPNIVSQSKSINDKGCEAFISMVQGQVQSYQLDKNSIPSVADLVSGGYLKANQKSCPNGNSIKIDSSGNVSEKK
4XTR Chain:G ((15-36))
------RWRVYLLIVLLVMLLFIFLIMK-------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4XTR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2058 for 80 contacts (-25.7/contact) +
2D Compatibility (PS) -2387 + (NN) -1410 + (LL) 4428
1D Compatibility (HY) -4400 + (ID) 250
Total energy: -6077.0 ( -75.96 by residue)
QMean score : 0.223
(partial model without unconserved sides chains):
PDB file :
Tito_4XTR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4XTR-query.scw
PDB file :
Tito_Scwrl_4XTR.pdb
: