Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKLTKIQETLGKEKIEAVLVTSEFNRRYVSGFTGTSGV----ALILPEKAYFVT-DFRYTEQAAKQAEGYEIV-----QHTGPIFDTVEDLLIKNDTKTLHFEADYVTVSEFKQMERVFNR-QLIPLTGFFEEMRKVKTASELKAIRTACDIADAAFAHIIQFIKPGMAEIEVSNELEFFMRRA-GATSSSFDTIVASGIRSALPHGVASDKKIEVGDFVTMDYGCYYDGYCSDMTRTIAVGEPAEKLKEIYQITLDAQLKVIDSLKPGMTGIEADAIARDYISSFGYGDAFGHSLGHGIGLEIHEGPNLSFKSPQKLEVGHVVTDEPGIYLPGIGGVRIEDDLLITETGNEILIHSPKELIIL |
| 4RGZ Chain:N ((8-367)) | --RIHKFQAHFGKKGFEGALVAPGSNFYYLTGFNPLGTLERLFVLILPSEGLLTAIAPRLYEKELEEFNG-EVVLWSDSENPYKIFATKIKETFKEGEKLLI--DDTMPVGVFLKAKDIFDKYSLHPISPVISELREIKDKDEIKAHKKAAEIVDKVFYRFIEGKLEGKSERELANRIEYMIKNEFGADDVSFEPIVASGPNGANPHHRPSHRKIRKGDVVIFDYGAKYLGYCSDVTRTVVVGPPSEEVKKVYEIVKEAQETAVQKVAEGIPAEVVDATARGIISKYGYGEYFIHRTGHGLGIDVHEEPYISPGNKKILKDGMVFTIEPGIYLQGKFGVRIEDDVALVDKKGIRLTNADRELITL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RGZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -153282 for 2869 contacts (-53.4/contact) +
2D Compatibility (PS) -37417 + (NN) -13728 + (LL) 508
1D Compatibility (HY) -20800 + (ID) 6500
Total energy: -231219.0 ( -80.59 by residue)
QMean score : 0.445
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