Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKTLTNKLAEKEHAAVVTYIMGGDGGLDNLEEQLLFLEKSGVSAIEIGIPFSDPVADGPIIQLAGLRALKEQVSLEAILNKLAMSK---VQIPLIIMSYINPIFHLGIPKFVELVQKTPVKGLIIPDLPYEHQKLITPELQGTDIALIPLVSLTSPKERLEEIAKQAEGFIYAVTVNGTTGVRSEFDAHIDSHLAYLKSISPVPVLAGFGVSSIEHVEKFA-HVCDGVIIGSKVVQMLHEEK------TAELGAFLQKAAEVRIKN
3NAV Chain:A ((17-269))
-----------AQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKGYTYLLSRA--------ANMPVHALLERLQQFDAPPALLGFGISEPAQVKQAIEAGAAGAISGSAVVKIIETHLDNPAKQLTELANFTQAMKKAT---
General information:
TITO was launched using:
RESULT:
Template:
3NAV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -204679 for 1997 contacts (-102.5/contact) +
2D Compatibility (PS) -26684 + (NN) -20915 + (LL) 1328
1D Compatibility (HY) -7600 + (ID) 3250
Total energy: -261800.0 ( -131.10 by residue)
QMean score : 0.712
(partial model without unconserved sides chains):
PDB file :
Tito_3NAV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NAV-query.scw
PDB file :
Tito_Scwrl_3NAV.pdb
: