Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---LFEKTNRM-NLLFDFYQELLTTKQKAYVSFYYLDDYSLGEIAEEFEVSRQ--------AIYDNIKRTEESLEKYEEKLGMLKKYQQREKLFTQLEAQLTKKNFLDEQVKDTLEQLKNID----
1K40 Chain:A ((921-1046))
NDKVYENVTGLVKAVIEMSSKIQPAPPEEYVPMVKEVGLALRTLLATVDETIPALPASTHREIEMAQKLLNSDLGELISKMKLAQQYVMTSLQQEYKKQMLTAAHALAVDAKNLLDVIDQARLKML
General information:
TITO was launched using:
RESULT:
Template:
1K40.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4305 for 770 contacts (-5.6/contact) +
2D Compatibility (PS) -11897 + (NN) -7258 + (LL) 0
1D Compatibility (HY) -4000 + (ID) 700
Total energy: -28160.0 ( -36.57 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_1K40.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1K40-query.scw
PDB file :
Tito_Scwrl_1K40.pdb
: