Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLIIRNKQELKEVILKQKQANKTIGFVPTMGFLHEGHMTLVSHARKESDFVVMSVFVNPTQFGPNEDFDAYPRDEAHDAKLAEEGGVDILFVPTVEEIYPTELSTKLHVD--KRVSVLDGADREGHFDGVVTVLTKLFHLVSPDNAYFGQKDAQQVAVVSGLVEDYFFPVNLRIIATVREADGLAKSSRNVYLTEKERKEAP-------VIHEALQLGRKLIES-GETNQAKIVQMMTEKINEQTSHELIAYLAIYSYPEFTPVTDWSKGIIIAAAVKYSKARLIDNELINVKRR
3Q12 Chain:D ((4-285))
MLIIETLPLLRQQIRRWRQEGKRIALVPTMGNLHEGHMTLVDEAKTRADVVVVTIFVNPLQFERPDDLAHYPRTLQEDCEKLTRHGADLVFAPAAADIYPAGLEKQTYVDVPALSTILEGASRPGHFRGVSTIVSKLFNLIQPDVACFGEKDYQQLALIRKMVADMGYDINIVGVPTVRAKDGLALSSRNGYLTEEERQIAPQLSKIMWALAEKMALGERQIDALLEEAAAQLLRVGF------TPDELF----IRDAETLQPLTVDSQQAVILMAAWLGKARLIDNQLVDL---
General information:
TITO was launched using:
RESULT:
Template:
3Q12.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148018 for 2098 contacts (-70.6/contact) +
2D Compatibility (PS) -29543 + (NN) -11664 + (LL) 1336
1D Compatibility (HY) -22400 + (ID) 5850
Total energy: -216139.0 ( -103.02 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_3Q12.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q12-query.scw
PDB file :
Tito_Scwrl_3Q12.pdb
: