Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVIVACGSGVATSQTVASKVERILKEKGVRATVEAVDIKSLEQHIKTSDVYVAITKANKE----------FDIPT--LNGIAFLTG-MGMDEETEKLLNALK
3NBM Chain:A ((6-108))
ELKVLVLCAGSGTSA-QLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFVLEHYQ
General information:
TITO was launched using:
RESULT:
Template:
3NBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39982 for 675 contacts (-59.2/contact) +
2D Compatibility (PS) -9783 + (NN) -2905 + (LL) 120
1D Compatibility (HY) -3600 + (ID) 550
Total energy: -56700.0 ( -84.00 by residue)
QMean score : 0.635
(partial model without unconserved sides chains):
PDB file :
Tito_3NBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NBM-query.scw
PDB file :
Tito_Scwrl_3NBM.pdb
: