Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLVLIRHGQSEWNKLNLFTGWHDVDLSQEGVVEAMTAGKRIKEAGLEFDVAFTSVLTRAIKTLNYVLEESDQMWVPVHKSWRLNERHYGALQGLNKQETAEKYGADQVQKWRRSYDTLPPLLEENDERQAKNDRRYQLLDTHAIPSGENLKVTLERVIPYWMDTIAPEIKEGRRVVIAAHGNSLRALVKFLEGISDDEIMDLEIPTGVPLVYELNADLKPVNKYYLDK
3GP5 Chain:B ((11-236))
-KLVLIRHGESTWNKENRFTGWVDVDLTEQGNREARQAGQLLKEAGYTFDIAYTSVLKRAIRTLWHVQDQMDLMYVPVVHSWRLNERHYGALSGLNKAETAAKYGDEQVLVWRRSYDTPPPALEPGDERAPYADPRYAKVPREQLPLTECLKDTVARVLPLWNESIAPAVKAGKQVLIAAHGNSLRALIKYLDGISDADIVGLNIPNGVPLVYELDESLTPIRHYYL--
General information:
TITO was launched using:
RESULT:
Template:
3GP5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86760 for 1865 contacts (-46.5/contact) +
2D Compatibility (PS) -24321 + (NN) -9092 + (LL) 196
1D Compatibility (HY) -22000 + (ID) 6900
Total energy: -148877.0 ( -79.83 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_3GP5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GP5-query.scw
PDB file :
Tito_Scwrl_3GP5.pdb
: