Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVFITTGTEHYLRQLMANYTGGNVTLLQNFSQSLLYQESTGEKLFQEGAEYRVLQSSGSIKGFGVVVFEYIHLRDEEIPIFLQMYQRASLHFSETPGLQSTKLTKAMNM-NKFLIISFWDSEVFFHDWKKSPLSKEITNIMRKNNTQSGFSHEDIYHYPEFSHDAK
3E8O Chain:A ((18-99))
----------------------------------------------------------------TMVISHGTLSASAEHAAHLRQLLVHIAQATRQEDGCLLYLVSEDLSQPGHFLITEHWDNLGAMHTHLALPGVTQAIDALKHL----------------------
General information:
TITO was launched using:
RESULT:
Template:
3E8O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37946 for 509 contacts (-74.6/contact) +
2D Compatibility (PS) -8885 + (NN) -3729 + (LL) 5044
1D Compatibility (HY) 1600 + (ID) 550
Total energy: -44466.0 ( -87.36 by residue)
QMean score : 0.435
(partial model without unconserved sides chains):
PDB file :
Tito_3E8O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3E8O-query.scw
PDB file :
Tito_Scwrl_3E8O.pdb
: