Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFILEVGSLADWVSGLATVGALFWAIKLNSNENRKRLTILFRHSFVSKKNGIIISDGKPKVFIITPVNNSKFSLEINFRQILLVPSLMDRLLFRAEPKKLSNIEALLKQLENKANWQIIKPNLSGEPIMFDYEFIVKQIKKYADGKRFNFAIE----IQFIDSTSKIFKHKEKLELRKIKGL----
1SSF Chain:A ((7-129))
-NSFVGLRVVAKWSSN-----GYFYSGKITRDVGAGKYKLLFDDGYECDVLG---------------------------KDILLCDPI--------------PLDTEVTALSEDEYF---------------SAGVVKGHRKESG--ELYYSIEKEGQRKWYKRMAVILSLEQGNRLREQYGLGPYE
General information:
TITO was launched using:
RESULT:
Template:
1SSF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31573 for 846 contacts (-37.3/contact) +
2D Compatibility (PS) -11884 + (NN) 4819 + (LL) 4148
1D Compatibility (HY) -8800 + (ID) 1100
Total energy: -44390.0 ( -52.47 by residue)
QMean score : 0.155
(partial model without unconserved sides chains):
PDB file :
Tito_1SSF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SSF-query.scw
PDB file :
Tito_Scwrl_1SSF.pdb
: