Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceLAKIKVMSIFGTRPEAIKMAPLVLALEKEPETFESTVVITAQHREMLDQVLEIFDIKPDIDLDIMKKGQTLAEITSRVMNGINEVIAAENPDIVLVHGDTTTSFAAGLATFYQQKMLGHVEAGLRTWNKYSPFPEEMNRQLTGVMADIHFSPTKQAKENLLAEGKDPATIFVTGNTAIDALKTTVQ----KDYHHPIL-----ENLGDNRLILMTAHRRENLGEPMQGMFEAVREIVESREDTELVYPMHLNPAVR-EKAMAILGGHERIHLIEPLDAIDFHNFLRKSYLVFTDSGGVQEEAPGMGVPVLV-LRDTTERPEGIEAGTLKLIGTNKENLIKEALDLLDNKESHDKMAQAANPYGDGFAANRILAAIKSHFEETDRPEDFIV
1VGV Chain:A ((1-372))---MKVLTVFGTRPEAIKMAPLVHALAKDPF-FEAKVCVTAQHREMLDQVLKLFSIVPDYDLNIMQPGQGLTEITCRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSPTETSRQNLLRENVADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIV-YPVHLNPNVREPVNRILGHVKNVILIDPQEYLPFVWLMNHAWLILTDSGGIQEEAPSLGKPVLVMRD-TTERPEAVTAGTVRLVGTDKQRIVEEVTRLLKDENEYQAMSRA----HNPYGDGQACSRILEALKNN--------


General information:
TITO was launched using:
RESULT:

Template: 1VGV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -161794 for 3045 contacts (-53.1/contact) +
2D Compatibility (PS) -39287 + (NN) -17750 + (LL) 908
1D Compatibility (HY) -32400 + (ID) 8350
Total energy: -258673.0 ( -84.95 by residue)
QMean score : 0.509

(partial model without unconserved sides chains):
PDB file : Tito_1VGV.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1VGV-query.scw
PDB file : Tito_Scwrl_1VGV.pdb: