Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANVHVINHPLVQHKLTIIRDKNTGTKAFRELVDEVATLMAYEITRDMELEDIQVETPLQTTTAKTLTGKKLGIVPILRAGLGMQDGILKLIPAAKVGHVGLYRDHDTLEPVEYFVKLPSDVEERLFIVVDPMLATGGSAIMAIDCLKKRGARNMKFMCLVAAPEGVKALQDAHPDVEIYVAGLDEKLDENGYIRPGLGDAGDRLFGTK
2EHJ Chain:C ((6-208))
------VKHPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEATADLETEKVTIEGWNGPVEIDQIKGKKITVVPILRAGLGMMDGVLENVPSARISVVGMYRNEETLEPVPYFQKLVSNIDERMALIVDPMLATGGSVIATIDLLKKAGCSSIKVLVLVAAPEGIAALEKAHPDVELYTASIDQGLNEHGYIIPGLGDAGDKIFGTK
General information:
TITO was launched using:
RESULT:
Template:
2EHJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -166596 for 1635 contacts (-101.9/contact) +
2D Compatibility (PS) -21934 + (NN) -4805 + (LL) 700
1D Compatibility (HY) -22000 + (ID) 5550
Total energy: -220185.0 ( -134.67 by residue)
QMean score : 0.562
(partial model without unconserved sides chains):
PDB file :
Tito_2EHJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2EHJ-query.scw
PDB file :
Tito_Scwrl_2EHJ.pdb
: