Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VIRFFKIVTPILLSISLVACSSASGKTEKITAPIEKDRNLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVESKKTDVLIISGDLTNNGEKT-SHEEL----AKKLTQVE-KNGTQVFVVPGNHDINNPWARKFEKDKQLPTDTISPTDFSKIYGDFGYEDAISSDEFSLSYLAA----P---SSKVWLLMLDTAIYKTNMQQGNPTTEGGLTAGTLDWIKESSALAKKNGAKLIPVLHHNLTDHNDVIQKGYTINYNQQVIDALTEGAMDFSLSGHIHTQNIRSAKSTDGKEITDIVTNALSV----------------FPHKYGNITYSAKNKNFTYQSQKLDMEAWAKAQGSTDENLLNFDQFDYETFYNSGYDKAMMDLMTDESYDKYNQADKEKMADTMGLNNMYFFAGTAPPKSDGMALWDSAPNSFLKDYVLSSSNPPKKSNDYYVSP |
| 3TGH Chain:A ((2-293)) | -------------------------------------CQLRFASLGDWGKDTKG----------------------QILNAKYFKQFIKNERVTFIVSPGSNFIDGVKGLNDPAWKNLYEDVYSEEKGDMYMPFFTVLGTRDWTGNYNAQLLKGQG----------DATNYPKWIM--------PNYWYHYFTHFTVSHKDLAAAFIFIDTWVLSSN------FPYKKIHEKAWNDLKSQLSVAKKIADFIIVVGDQPIYSSGYSRG---SSYLAYYLLPLLKDAEVDLYISGHDNNMEVIED-----NDMAHITCGSGSMSQGKSGMKNSKSLFFSSDIGFCVHELSNN--GIVTKFVSS--------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TGH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -66196 for 2040 contacts (-32.4/contact) +
2D Compatibility (PS) -25106 + (NN) -1762 + (LL) 9152
1D Compatibility (HY) -8400 + (ID) 1500
Total energy: -93812.0 ( -45.99 by residue)
QMean score : 0.400
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